Wednesday, October 7, 2009

research: BCA assay

it's week 16! how's everyone doing!

this week, i'm going to explain what is BCA protein assay.

what is BCA protein assay? it is an assay that quantitates protein concentration.

what does BCA stands for? BCA stands for bicinchorinic acid.

what is the principle of this assay?
principle of this assay:
2 major reactions occur in this assay

1. proteins are held together by peptide bonds. upon exposure to copper ions (Cu2+), the peptide bonds will reduce Cu2+ to Cu+. this reduction process is temperature dependent. this also means that, the more proteins you have in the solution, the more copper ions are reduced to Cu+.

2. BCA molecules will bind to Cu+, resulting in the formation of a purple-coloured product. the colour intensity of this product is then measured at wavelength 562nm using a plate reader. (colourimetic assay)

how does the assay work?
the assay usually comes in a kit. inside the kit, you can find: BCA reagents A and B, 96-well flat bottom plate, Bovine . Albumin (BSA) standards.

BSA standards: as the name suggests, BSA is a serum albumin, and we all know that albumin is a protein. so the BSA standards serve as a control for the kit (standard control). the BSA concentration that the company provides is usually 2mg/ml (2000ug/ul). to get a series of concentrations, we dilute the BSA (from high concentration to low).

Range of concentration of BSA diluted: from 0mg/ml to 2mg/ml. usually we can have up to 6-7 standards inclusive of 0mg/ml. BSA is diluted in ultrapure water (Milli-Q water).

Eg,
well A: 0 ug/ml (no BSA standard) /BLANK
well B: 131.072 ug/ml BSA
well C: 262.144 ug/ml BSA
well D: 327.68 ug/ml BSA
well E: 409.6 ug/ml BSA
well F:512 ug/ml BSA
well G: 640 ug/ml BSA
well H: 2000 ug/ml BSA

next, we prepare the BCA working reagents .
BCA working reagents = Reagent A + Reagent B (in ratio 50:!)
reagent A is colourless, reagent B is blue in colour.
one important thing to note is that the working reagent must be prepared freshly prior to use and stored at 4 degrees celsius. Do not keep overnight.
upon adding reagent B, the solution immediately turns GREEN. mix well.

the next component we will require is THE BUFFER. this buffer, simply refers to the the buffer we use in our samples. eg, if the samples are cells, then the buffer is the cell culture medium.

steps:
1. Add 20 ul of BSA standards to the individual wells.
2. Add x ul of sample to each well.
3. Add x ul of buffer to the wells that contain BSA standards.
4. Add 20 ul of Milli-water to the wells that contain samples.

Steps 3 and 4: This is to eliminate disturbances caused by any possible absorption by the buffer when measuring the absorbance of samples. Similar reason applies to adding 20uL of water into the samples’ wells.

5. Add (200-20-x) ul of BCA working reagents to all the wells.
- therefore total volume in each well: 200 ul.
-upon adding, you will find that the solution turns purple in the presence of proteins
6. Mix well, by pipetting up and down.
7. Cover the plate.
8. Incubate at 37 degrees celsius for 30 minutes.
- before reading on the plate reader, ensure that there are no bubbles. the presence of bubbles will affect the reading.
9. Read at wavelength 562 nm.

Simple? Yeah.

Any alternatives?
some of you may have used before the bradford assay. For those who have not, bradford assay is an alternative to BCA protein assay. (Read here for more information on bradford assay (wiki) : http://en.wikipedia.org/wiki/Bradford_protein_assay )

BCA protein assay is better than bradford as:
1. more sensitive compared to bradford assay


that's all! (:

LIM JIA HUI (JOEY)
0703605f tg01
group 2

15 comments:

  1. Hello Joey!!

    I would like to ask u a question.

    As you say, "Steps 3 and 4: This is to eliminate disturbances caused by any possible absorption by the buffer when measuring the absorbance of samples. Similar reason applies to adding 20uL of water into the samples’ wells",

    since there is a possibility of absorption by the buffer, why do you still add buffer in step 3? And why not just add water to the standards as the same as step 4 (so that the reagent is the same thus easier for comparison?)

    Sorry i'm confused. Pls explain.

    Thks.

    Zhang'e
    0704086H
    TG02

    ReplyDelete
  2. to zhang e,

    sorry for the confusion, i'll explain.

    the buffer is present in the samples. there is a chance that if you do not balance the buffer, the standard results may not be accurate. however, if u add the buffer only, the sample results will not be accurate because the standards are prepared in water. so i add water to the samples to balance.

    the standards are prepared in water. when i add water to the samples, i balance off the water.
    whereas, the samples are prepared in the culture medium (buffer) right. so when i add buffer to the standards, i balance off the buffer.

    the main purpose: is just to remove the interference between the standards and samples.

    hope this answers, if it didnt, you can post your question again! (:

    jiahui

    ReplyDelete
  3. Joey,

    Why is the final buffer solution Green?
    Since colourless reagent A + Blue reagent B = Green!?!?!?

    Li Yinliang Alex 0704894E
    TG02 Group 2
    9 October 2009

    ReplyDelete
  4. HI ALEX,

    BCA Reagent A contains sodium carbonate, sodium bicarbonate, bicinchoninic acid and sodium tartrate in 0.1 M sodium hydroxide while
    BCA Reagent B contains 4% cupric sulfate.

    it's a chemical reaction.

    hope this answers.

    jiahui

    ReplyDelete
  5. Hello joey
    Erm for the incubation temperature, it is 37 degree celsius so which means that 37 degree celsius is the optimum temp for the reaction.

    So since the reduction process is temperature dependent, does it mean higher temp, the reaction is more rapid and if incubate in temperature higher than 37 degree celsius, will the result be accurate?

    Thanks

    Jennifer

    ReplyDelete
  6. Hi

    Are there any disadvantages to the BCA assay?

    Liyana
    0703827F

    ReplyDelete
  7. HI JENNIFER,
    no the result will not be accurate. Firstly, u are testing for proteins. at high temperature, protein will denature. and it doesn't mean at higher temperature, your reaction will be faster.

    Hi liyana,
    yes there are disadvantages to this common BCA assay. any disulfide reagents in your sample, such as dithiothreitol (DTT), 2-mercaptoethanol and tris(2-carboxyethyl) phosphine (TCEP) are capable of reducing copper as well, hence interfering with the results. to prevent this, some researchers prefer to use BCA protein assay kit-reducing agent compatible. BCA protein assay kit-reducing agent compatible is capable of minimizing this reducing effect caused by disulfide reducing agents. In this kit, a compatibility reagent is added. This reagent modifies the disulfide reducing agents added to the samples, allowing more accurate determination of protein concentration.

    other disadvantages include, requires incubation at 37oC for colour development, and it does not have a true end-point (meaning, the colour of the protein will intensify as time progresses.

    jiahui

    ReplyDelete
  8. Hey Joey,

    Since this assay require mixing reagent A and reagent B, why is it that they don't come in a bottle that's already mixed together? Is it because there is an interaction that is not stable or some sort?

    Yvonee
    0703189A

    ReplyDelete
  9. hi yvonee,
    good question. I dont think it's because the reagents are unstable when mixed. The purpose of the reagent A and B is to reduce copper in the sample. If the reagents come in mixed ones, the reagent will not be fresh and may not work as well as those prepared freshly. hope this answers...

    jiahui

    ReplyDelete
  10. Joey,

    Milli-Q water = Ultrapure water?

    Li Yinliang Alex 0704894E
    TG02 Group 8

    ReplyDelete
  11. Can we make the BSA standards in the buffer that we use for our samples? Instead of using water as a dilunet.

    ReplyDelete
  12. Wow so nice! I like this site. Keep it working every day.

    NADH Assay Kit

    ReplyDelete
  13. Pretty good post. I just stumbled upon your blog and wanted to say that I have really enjoyed reading your blog posts.

    multiplex assay

    ReplyDelete
  14. Thanks for sharing research: BCA assay This useful information! Hope that you will continue sharing this useful information! Hope that you will continue with Post is nicely written and it contains many good things for me. I am glad to find your impressive way of writing the post. Now it becomes easy for me to understand and implement the concept.
    Assay Kits.

    ReplyDelete
  15. Thanks a lot for this contribution! It's been very useful for me. Everything is very open and represents very clear explanation of issues. Really blogging is spreading its wings quickly. Your write up is a good example of Immunoassay- A Powerful Analytical Technique. Your website is very useful. Thanks for sharing.Sialic Acid Assay Kit

    ReplyDelete